Jemboss windows

All files will be saved on this computer only and there is no option for remote file sharing. If you install the mEMBOSS package for Windows then Jemboss is installed automatically and a shortcut icon will appear on the desktop at the installation stage. A jemboss.

It holds details of the default home Section 9. A file called. If there is already a Jemboss icon on the desktop machine, there is an easy check to determine whether it is a local or remote installation.

Double click on the icon to open the Jemboss window. Select the File menu at the top left. If the menu options contain only Saved Results and Exit , then it is a standalone version.

If there is already a standalone version on the desktop, and a new version is to be installed, the old one must be cleanly uninstalled and the jemboss. Many institutions offer this service for their students and staff and a username and password is generally required. Access the remote Jemboss launch page by typing the appropriate URL into a web browser. Click the red Launch Jemboss link on the webpage and hit the Run button on the security warning page which appears.

The Jemboss window will appear on the desktop computer. Enter your username and password to get started. The initial launch of a new Jemboss version will be slightly longer than subsequent launches as new data must be downloaded to the local computer. The local machine now plays host to a number of very small files. Everything else is created and stored on the remote machine. Once a Jemboss Window is launched, either through a web page or from a desktop icon, a Jemboss session is started.

This session then continues until the Jemboss window is closed. All session-specific information is then lost. Jemboss stores a number of results Section 9. Session results are accessible whilst the current session is running and serve to provide a short and recent overview of analyses.

Customisation information can be used as a default for a particular session or can be saved over several sessions. The main Jemboss window opens upon launch and consists of three panes, only two of which are immediately visible.

Launch the Jemboss window either locally Section 9. The left hand pane contains all the analysis programs, either listed individually or grouped into categories Section 9. Click on the Information group category in the top half of the left hand pane and select the WhichDB program. The program returns with the USA information Section 6. The third pane is the local file manager Section 9. None of the Jemboss windows close automatically, so they should be closed once they have been finished with otherwise the screen will become cluttered.

There are two file management windows. The local file manager Section 9. There are three results managers; the Job Manager Section 9. They consist of two panes. The left hand pane contains a list of results, the right hand pane contains details of the analysis run.

To do this use the prompt command. If, instead, the server responded with Interactive mode on , then the server already had prompting turned off; in that case type prompt again.

You can now exit from your FTP session with the command quit. The program wget can be used to download a remote directory non-interactively. Assuming you have wget installed, use the following command; it will generate a lot of output on the screen:.

This command will have created a directory called emboss. Move to whichever directory you chose e. Check that the command:. Such tar files are archive files containing the individual source code files. You must now extract the archive using the tar program:. Enter the directory and type ls to show the files. The directory listing should look something like this:. The tar program on most UNIX distributions will usually perform satisfactorily, however some will not. So, check the platform specific notes Section 1.

Downloading with a Web Browser. Downloading by Anonymous FTP. Interactive FTP. FTP using wget.